Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

Download FIRM

Citation

Regulation Of Rna Metabolic Process (GO:0051252) Genes Targeted by hsa-mir-139-5p in GLB Brain Sun Cluster 76 Table contains all genes in the GLB Brain Sun cluster number 76. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-139-5p GO:0051252 30818 KCNIP3 Kv channel interacting protein 3, calsenilin [Source:HGNC Symbol;Acc:15523] zzz999 Yes 23279 NUP160 nucleoporin 160kDa [Source:HGNC Symbol;Acc:18017] zzz999 338645 LUZP2 leucine zipper protein 2 [Source:HGNC Symbol;Acc:23206] T 162655 ZNF519 zinc finger protein 519 [Source:HGNC Symbol;Acc:30574] zzz999 Yes 30812 SOX8 SRY (sex determining region Y)-box 8 [Source:HGNC Symbol;Acc:11203] zzz999 Yes 339761 CYP27C1 cytochrome P450, family 27, subfamily C, polypeptide 1 [Source:HGNC Symbol;Acc:33480] zzz999 55122 AKIRIN2 akirin 2 [Source:HGNC Symbol;Acc:21407] P T Yes 1996 ELAVL4 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) [Source:HGNC Symbol;Acc:3315] zzz999 148281 SYT6 synaptotagmin VI [Source:HGNC Symbol;Acc:18638] zzz999 57801 HES4 hairy and enhancer of split 4 (Drosophila) [Source:HGNC Symbol;Acc:24149] T Yes 64864 RFX7 regulatory factor X, 7 [Source:HGNC Symbol;Acc:25777] P T Yes 83591 THAP2 THAP domain containing, apoptosis associated protein 2 [Source:HGNC Symbol;Acc:20854] T 57642 COL20A1 collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:14670] zzz999 79570 NKAIN1 Na+/K+ transporting ATPase interacting 1 [Source:HGNC Symbol;Acc:25743] zzz999 27022 FOXD3 forkhead box D3 [Source:HGNC Symbol;Acc:3804] zzz999 Yes 50809 HP1BP3 heterochromatin protein 1, binding protein 3 [Source:HGNC Symbol;Acc:24973] zzz999 339559 ZNF642 zinc finger protein 642 [Source:HGNC Symbol;Acc:24708] zzz999 Yes 10220 GDF11 growth differentiation factor 11 [Source:HGNC Symbol;Acc:4216] zzz999 55636 CHD7 chromodomain helicase DNA binding protein 7 [Source:HGNC Symbol;Acc:20626] P T 164633 CABP7 calcium binding protein 7 [Source:HGNC Symbol;Acc:20834] T 140458 ASB5 ankyrin repeat and SOCS box containing 5 [Source:HGNC Symbol;Acc:17180] zzz999 6664 SOX11 SRY (sex determining region Y)-box 11 [Source:HGNC Symbol;Acc:11191] zzz999 Yes 55273 TMEM100 transmembrane protein 100 [Source:HGNC Symbol;Acc:25607] zzz999 7080 NKX2-1 NK2 homeobox 1 [Source:HGNC Symbol;Acc:11825] zzz999 Yes 57631 LRCH2 leucine-rich repeats and calponin homology (CH) domain containing 2 [Source:HGNC Symbol;Acc:29292] P T 10765 KDM5B lysine (K)-specific demethylase 5B [Source:HGNC Symbol;Acc:18039] T Yes 6505 SLC1A1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 [Source:HGNC Symbol;Acc:10939] zzz999 3030 HADHA hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit [Source:HGNC Symbol;Acc:4801] zzz999 284161 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 [Source:HGNC Symbol;Acc:20883] T 5881 RAC3 ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) [Source:HGNC Symbol;Acc:9803] zzz999 221687 RNF182 ring finger protein 182 [Source:HGNC Symbol;Acc:28522] zzz999 339479 FAM5C family with sequence similarity 5, member C [Source:HGNC Symbol;Acc:22393] zzz999 26122 EPC2 enhancer of polycomb homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:24543] zzz999 57110 HRASLS HRAS-like suppressor [Source:HGNC Symbol;Acc:14922] zzz999 23590 PDSS1 prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:HGNC Symbol;Acc:17759] zzz999 10656 KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 [Source:HGNC Symbol;Acc:18117] zzz999 7090 TLE3 transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) [Source:HGNC Symbol;Acc:11839] zzz999 Yes 23013 SPEN spen homolog, transcriptional regulator (Drosophila) [Source:HGNC Symbol;Acc:17575] zzz999 Yes 10566 AKAP3 A kinase (PRKA) anchor protein 3 [Source:HGNC Symbol;Acc:373] zzz999 92196 DAPL1 death associated protein-like 1 [Source:HGNC Symbol;Acc:21490] zzz999 5459 POU4F3 POU class 4 homeobox 3 [Source:HGNC Symbol;Acc:9220] zzz999 Yes 90362 FAM110B family with sequence similarity 110, member B [Source:HGNC Symbol;Acc:28587] T 347252 IGFBPL1 insulin-like growth factor binding protein-like 1 [Source:HGNC Symbol;Acc:20081] zzz999 7443 VRK1 vaccinia related kinase 1 [Source:HGNC Symbol;Acc:12718] zzz999 6732 SRPK1 SRSF protein kinase 1 [Source:HGNC Symbol;Acc:11305] T Yes 342357 ZKSCAN2 zinc finger with KRAB and SCAN domains 2 [Source:HGNC Symbol;Acc:25677] T Yes 91584 PLXNA4 plexin A4 [Source:HGNC Symbol;Acc:9102] zzz999 25805 BAMBI BMP and activin membrane-bound inhibitor homolog (Xenopus laevis) [Source:HGNC Symbol;Acc:30251] zzz999 Yes 29964 PRICKLE4 prickle homolog 4 (Drosophila) [Source:HGNC Symbol;Acc:16805] zzz999 10203 CALCRL calcitonin receptor-like [Source:HGNC Symbol;Acc:16709] zzz999 29798 C2orf27A chromosome 2 open reading frame 27A [Source:HGNC Symbol;Acc:25077] zzz999 6224 RPS20 ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] zzz999 10194 TSHZ1 teashirt zinc finger homeobox 1 [Source:HGNC Symbol;Acc:10669] zzz999 Yes 84467 FBN3 fibrillin 3 [Source:HGNC Symbol;Acc:18794] zzz999 30010 NXPH1 neurexophilin 1 [Source:HGNC Symbol;Acc:20693] P T 204962 SLC44A5 solute carrier family 44, member 5 [Source:HGNC Symbol;Acc:28524] zzz999 64093 SMOC1 SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:20318] T 4878 NPPA natriuretic peptide A [Source:HGNC Symbol;Acc:7939] T 80725 SRCIN1 SRC kinase signaling inhibitor 1 [Source:HGNC Symbol;Acc:29506] zzz999 11013 TMSB15A thymosin beta 15a [Source:HGNC Symbol;Acc:30744] zzz999 3110 MNX1 motor neuron and pancreas homeobox 1 [Source:HGNC Symbol;Acc:4979] zzz999 Yes 4821 NKX2-2 NK2 homeobox 2 [Source:HGNC Symbol;Acc:7835] zzz999 Yes 3820 KLRB1 killer cell lectin-like receptor subfamily B, member 1 [Source:HGNC Symbol;Acc:6373] zzz999 5911 RAP2A RAP2A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9861] zzz999 7155 TOP2B topoisomerase (DNA) II beta 180kDa [Source:HGNC Symbol;Acc:11990] zzz999 Yes 7270 TTF1 transcription termination factor, RNA polymerase I [Source:HGNC Symbol;Acc:12397] zzz999 10215 OLIG2 oligodendrocyte lineage transcription factor 2 [Source:HGNC Symbol;Acc:9398] zzz999 Yes 190 NR0B1 nuclear receptor subfamily 0, group B, member 1 [Source:HGNC Symbol;Acc:7960] zzz999 Yes 4082 MARCKS myristoylated alanine-rich protein kinase C substrate [Source:HGNC Symbol;Acc:6759] zzz999 140886 PABPC5 poly(A) binding protein, cytoplasmic 5 [Source:HGNC Symbol;Acc:13629] T 6328 SCN3A sodium channel, voltage-gated, type III, alpha subunit [Source:HGNC Symbol;Acc:10590] P 3751 KCND2 potassium voltage-gated channel, Shal-related subfamily, member 2 [Source:HGNC Symbol;Acc:6238] T 7776 ZNF236 zinc finger protein 236 [Source:HGNC Symbol;Acc:13028] T Yes 23677 SH3BP4 SH3-domain binding protein 4 [Source:HGNC Symbol;Acc:10826] zzz999 125972 CALR3 calreticulin 3 [Source:HGNC Symbol;Acc:20407] zzz999 56961 SHD Src homology 2 domain containing transforming protein D [Source:HGNC Symbol;Acc:30633] zzz999 114659 LRRC37B leucine rich repeat containing 37B [Source:HGNC Symbol;Acc:29070] zzz999 26036 ZNF451 zinc finger protein 451 [Source:HGNC Symbol;Acc:21091] zzz999 283248 RCOR2 REST corepressor 2 [Source:HGNC Symbol;Acc:27455] zzz999 84206 MEX3B mex-3 homolog B (C. elegans) [Source:HGNC Symbol;Acc:25297] P T 55765 C1orf106 chromosome 1 open reading frame 106 [Source:HGNC Symbol;Acc:25599] zzz999 3141 HLCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) [Source:HGNC Symbol;Acc:4976] T 113263 GLCCI1 glucocorticoid induced transcript 1 [Source:HGNC Symbol;Acc:18713] T 6877 TAF5 TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa [Source:HGNC Symbol;Acc:11539] zzz999 388228 SBK1 SH3-binding domain kinase 1 [Source:HGNC Symbol;Acc:17699] P T 284406 ZFP82 zinc finger protein 82 homolog (mouse) [Source:HGNC Symbol;Acc:28682] zzz999 Yes 8872 CDC123 cell division cycle 123 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:16827] zzz999 55219 TMEM57 transmembrane protein 57 [Source:HGNC Symbol;Acc:25572] zzz999 389677 RBM12B RNA binding motif protein 12B [Source:HGNC Symbol;Acc:32310] zzz999 51182 HSPA14 heat shock 70kDa protein 14 [Source:HGNC Symbol;Acc:29526] zzz999 3209 HOXA13 homeobox A13 [Source:HGNC Symbol;Acc:5102] T Yes 154743 C7orf60 chromosome 7 open reading frame 60 [Source:HGNC Symbol;Acc:26475] T 23560 GTPBP4 GTP binding protein 4 [Source:HGNC Symbol;Acc:21535] zzz999 196074 METTL15 methyltransferase like 15 [Source:HGNC Symbol;Acc:26606] T 80319 CXXC4 CXXC finger protein 4 [Source:HGNC Symbol;Acc:24593] zzz999 128414 NKAIN4 Na+/K+ transporting ATPase interacting 4 [Source:HGNC Symbol;Acc:16191] zzz999 153733 CCDC112 coiled-coil domain containing 112 [Source:HGNC Symbol;Acc:28599] zzz999 10951 CBX1 chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] P T 55824 PAG1 phosphoprotein associated with glycosphingolipid microdomains 1 [Source:HGNC Symbol;Acc:30043] zzz999 22871 NLGN1 neuroligin 1 [Source:HGNC Symbol;Acc:14291] zzz999 10912 GADD45G growth arrest and DNA-damage-inducible, gamma [Source:HGNC Symbol;Acc:4097] zzz999 7434 VIPR2 vasoactive intestinal peptide receptor 2 [Source:HGNC Symbol;Acc:12695] zzz999 9447 AIM2 absent in melanoma 2 [Source:HGNC Symbol;Acc:357] zzz999 25806 VAX2 ventral anterior homeobox 2 [Source:HGNC Symbol;Acc:12661] zzz999 Yes 214 ALCAM activated leukocyte cell adhesion molecule [Source:HGNC Symbol;Acc:400] zzz999 65243 ZNF643 zinc finger protein 643 [Source:HGNC Symbol;Acc:28053] zzz999 Yes 4482 MSRA methionine sulfoxide reductase A [Source:HGNC Symbol;Acc:7377] zzz999 84465 MEGF11 multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:29635] zzz999 554313 HIST2H4B histone cluster 2, H4b [Source:HGNC Symbol;Acc:29607] zzz999 2888 GRB14 growth factor receptor-bound protein 14 [Source:HGNC Symbol;Acc:4565] zzz999 2895 GRID2 glutamate receptor, ionotropic, delta 2 [Source:HGNC Symbol;Acc:4576] zzz999 375612 LHFPL3 lipoma HMGIC fusion partner-like 3 [Source:HGNC Symbol;Acc:6589] zzz999

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.